Endou Mamoru (Mark Evans in the European version), is a very talented goalkeeper. He plays for his high school's Soccer team called Raimon Junior High School which has just won the Football Frontier. One day, the aliens from Aliea Academy, a mysterious school that trains its students into making soccer a tool to destroy other schools, approach and wreck Raimon Junior High, sending Raimon Eleven into a journey to stop the aliens, the soccer team named Gemini Storm, with Raimon Eleven's last gift , the van called Inazuma Caravan. The heroes have to travel around Japan, recruit new players, seek the secret behind the Aliea Academy, and save Japan from being destroyed.